cwlcromwell을 만드는 그림을 실행할 수 있습니다

From ubuntu
MAINTAINER Percipere
RUN apt-get update
RUN apt -y upgrade
RUN apt-get -y install openjdk-8-jre
RUN apt-get -y install curl
RUN apt-get -y install python3
RUN apt-get -y install python3-pip
RUN apt-get -y install git
RUN git clone https://github.com/common-workflow-language/cwltool.git
RUN pip3 install ./cwltool 
RUN apt-get -y install vim

RUN useradd -ms /bin/bash cromwell
USER cromwell
WORKDIR /home/cromwell

RUN curl -LO https://github.com/broadinstitute/cromwell/releases/download/32/cromwell-32.jar
RUN ln -s ./cromwell-32.jar ./cromwell.jar

CMD /bin/bash

탭 만들기

$ docker build -t cromwell .

부팅 컨테이너

$ docker run -it cromwell

cromwell 동작 확인

cromwell@4095de5a46e4:~$ pwd
/home/cromwell
cromwell@4095de5a46e4:~$ java -jar cromwell.jar --version
cromwell 32

cromwell@4095de5a46e4:~$ java -jar cromwell.jar run --type cwl --inputs echo-job.yml 1st-tool.cwl 
...
[2018-05-30 08:47:57,44] [info] SingleWorkflowRunnerActor workflow finished with status 'Succeeded'.
{
  "outputs": {

  },
  "id": "00866459-8bbc-454c-9954-fa9f5a6548a6"
}
...
[2018-05-30 08:48:00,61] [info] Shutdown finished.