유전자 데이터 처리 2의 ftp 데이터 빠른 검색
2577 단어 유전자 데이터 처리
linux에서grep:
curl -s "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/current.tree" | grep NA12878실행 결과:
hadoop@Mcnode1:~/cloud/adam/xubo/testAdam34/TestBaiBas$ curl -s "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/current.tree" | grep NA12878
ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment directory 263 Wed Oct 14 20:45:44 2015
ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150706.CEU.illumina_platinum_ped.bam.bas file 632 Fri Aug 28 15:03:38 2015 c45e3abf5b6267b04b324c3f8658ab9a
ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150706.CEU.illumina_platinum_ped.cram file 40218294392 Wed Oct 14 06:58:50 2015 2e509230038fb75649eac43d76fb2eb6
ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150706.CEU.illumina_platinum_ped.cram.crai file 2863337 Wed Oct 14 08:11:03 2015 74d46dcb99d76c8aae4825c86366e8f2
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment directory 215 Mon Nov 9 07:11:54 2015
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment/NA12878.alt_bwamem_GRCh38DH.20150826.CEU.exome.cram.crai file 624787 Sun Nov 8 07:34:07 2015 67e9508a470934f8d8840e941d449477
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment/NA12878.alt_bwamem_GRCh38DH.20150826.CEU.exome.bam.bas file 4536 Mon Sep 14 20:02:24 2015 da952f31a8bdca3a135160b3cf2ccb9d
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment/NA12878.alt_bwamem_GRCh38DH.20150826.CEU.exome.cram file 8582414634 Sun Nov 8 07:34:04 2015 2b79e04b3c9b412d65cfd5f65c425fa0
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment directory 236 Thu Oct 8 15:05:08 2015
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.cram.crai file 376548 Thu Oct 8 05:50:17 2015 9d1d429d386a1d94c8b9fb97251f5a87
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.cram file 4629995965 Thu Oct 8 05:50:14 2015 2a49236b3664cc1853b023e6b76ee41f
ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.bam.bas file 621 Tue Sep 1 12:00:08 2015 f51294f9c5b2c53d338fd8d6a44f0e9f
참조:
【1】 https://www.biostars.org/p/84137/
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유전자 데이터 처리 77 vcf 파일에서 어떤 염색체의 데이터 추출1. 코드: 2. 스크립트: 3. 결과: GRCH38chr20: GRCH38chr22:...
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