R MetaboAnalystR 대사 팀 분석 팩

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R MetaboAnalystR 대사 팀 분석 팩
  • https://github.com/xia-lab/MetaboAnalystR
  • #       bio 
    metr_pkgs "Rserve", "ellipse", "scatterplot3d", "Cairo", "randomForest", "caTools", "e1071", "som", "impute", "pcaMethods", "RJSONIO", "ROCR", "globaltest", "GlobalAncova", "Rgraphviz", "preprocessCore", "genefilter", "pheatmap", "SSPA", "sva", "Rcpp", "pROC", "data.table", "limma", "car", "fitdistrplus", "lars", "Hmisc", "magrittr", "methods", "xtable", "pls", "caret", "lattice", "igraph", "gplots", "KEGGgraph", "reshape", "RColorBrewer", "tibble", "siggenes", "plotly")
    list_installed in% list_installed[, "Package"]))
    
    if(length(new_pkgs)!=0){
      source("https://bioconductor.org/biocLite.R")
      biocLite(new_pkgs, dependencies = TRUE, ask = FALSE)
      print(c(new_pkgs, " packages added..."))
    }
    if((length(new_pkgs)<1)){
      print("No new packages added...")
    }
    
    install.packages('rmarkdown')
    install.packages("devtools")
    
    devtools::install_github("xia-lab/MetaboAnalystR")
    #devtools::install_github("xia-lab/MetaboAnalystR", build_vignettes=TRUE)

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